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Should I issue a refund to a customer who initiated a chargeback if I agree with their claim?

Written by Avia Chen

Once a chargeback is opened, issuing a manual refund may not be the best course of action.

Why you shouldn't refund manually

When a chargeback is filed, the issuing bank typically applies a temporary credit to the customer's account while the dispute is under review. Issuing a manual refund on top of this could result in the customer being reimbursed twice — once by you and once by the bank — which is very difficult to reverse.

Additionally, some payment processors (such as Shopify) will automatically block the refund option once a chargeback is filed, preventing you from issuing one until the dispute is fully resolved.

What to do instead

Option A: Let the dispute run its course

Wait for the bank's final decision (this can take up to 75 days). In the meantime, let the customer know that a manual refund cannot be issued while a dispute is active, in order to prevent duplicate reimbursement.

While waiting, we recommend gathering any relevant evidence you may have on hand — such as proof of delivery, communication history, or transaction records. For a full list of what's most effective to submit, check out our article: What Evidence Can I Submit for a Dispute?

  • If the customer wins the chargeback, they keep the funds — no further action is needed.

  • If the merchant wins and still wants to grant the refund, it can be safely issued at that point.

Option B: Accept the chargeback

If you agree with the claim and want to resolve it quickly, you can accept the chargeback directly within your payment processor (e.g., "Accept chargeback" in Shopify).

⚠️ Please note: Accepting a chargeback will trigger a standard chargeback fee (e.g., $15 in Shopify) and will not be refunded to your account. Always confirm with your team before proceeding with this option.

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